RF-PseU: A Random Forest Predictor for RNA Pseudouridine Sites

نویسندگان
چکیده

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

iRNA-PseU: Identifying RNA pseudouridine sites

As the most abundant RNA modification, pseudouridine plays important roles in many biological processes. Occurring at the uridine site and catalyzed by pseudouridine synthase, the modification has been observed in nearly all kinds of RNA, including transfer RNA, messenger RNA, small nuclear or nucleolar RNA, and ribosomal RNA. Accordingly, its importance to basic research and drug development i...

متن کامل

(RF) — Random Forest Random Field

We combine random forest (RF) and conditional random field (CRF) into a new computational framework, called random forest random field (RF). Inference of (RF) uses the Swendsen-Wang cut algorithm, characterized by MetropolisHastings jumps. A jump from one state to another depends on the ratio of the proposal distributions, and on the ratio of the posterior distributions of the two states. Prior...

متن کامل

Prediction of protein-RNA binding sites by a random forest method with combined features

MOTIVATION Protein-RNA interactions play a key role in a number of biological processes, such as protein synthesis, mRNA processing, mRNA assembly, ribosome function and eukaryotic spliceosomes. As a result, a reliable identification of RNA binding site of a protein is important for functional annotation and site-directed mutagenesis. Accumulated data of experimental protein-RNA interactions re...

متن کامل

AUC-RF: A New Strategy for Genomic Profiling with Random Forest

Objective: Genomic profiling, the use of genetic variants at multiple loci simultaneously for the prediction of disease risk, requires the selection of a set of genetic variants that best predicts disease status. The goal of this work was to provide a new selection algorithm for genomic profiling. Methods: We propose a new algorithm for genomic profiling based on optimizing the area under the r...

متن کامل

MetalionRNA: computational predictor of metal-binding sites in RNA structures

MOTIVATION Metal ions are essential for the folding of RNA molecules into stable tertiary structures and are often involved in the catalytic activity of ribozymes. However, the positions of metal ions in RNA 3D structures are difficult to determine experimentally. This motivated us to develop a computational predictor of metal ion sites for RNA structures. RESULTS We developed a statistical p...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Frontiers in Bioengineering and Biotechnology

سال: 2020

ISSN: 2296-4185

DOI: 10.3389/fbioe.2020.00134